Re: build problem with intel compiler

From: Mary Haley <haley_at_nyahnyahspammersnyahnyah>
Date: Fri Mar 23 2012 - 09:13:31 MDT


Are you saying that you set all these environment variables, but that they have no effect? It's possible
that these settings are not being "seen" by the PyNGL installation if they are not done in the same shell.

Just before you type "python install" did you verify that all your environment variables were
set as expected?


On Mar 23, 2012, at 9:03 AM, Andre R. Erler wrote:

> I've attached a text file with all the environment variables I'm using. I read
> the page in your link and I have most of them from there, but it seems there
> are more relevant environment variables but I wasn't able to find a complete
> list.
> - Andre
> On March 23, 2012 09:57:07 AM Mary Haley wrote:
>> Did you try setting the CC environment variable to the compiler you want?
>> Please see:
>> vVars
>> --Mary
>> On Mar 22, 2012, at 1:20 PM, Andre R. Erler wrote:
>>> As far as I am aware, PyNGL doesn't give me any configuration options, so
>>> I don't know which options are used for PyNGL.
>>> I used the same environment and compiler flags to build NCL/NCARG and
>>> PyNGL. I built NCL/NCARG without PNG/libcairo-related stuff and without
>>> HDF4 and HDF- EOS. There was no mention of requirements in the readme so
>>> I didn't think this was a problem.
>>> - Andre
>>> On March 21, 2012 11:46:14 PM Mary Haley wrote:
>>>> It looks like NCL wasn't built with the same options as PyNGL.
>>>> How did you build NCL? What options did you use?
>>>> --Mary
>>>> On Mar 19, 2012, at 5:39 PM, Andre R. Erler wrote:
>>>>> Hi All,
>>>>> I've posted to this list earlier. I made some progress building PyNio
>>>>> and now I need to build PyNGL itself. Unfortunately I'm getting a
>>>>> rather strange error message.
>>>>> I'm running a 64bit kubuntu 11.04 system and I built NCARG/NCL and all
>>>>> the dependencies as well as PyNIO with the Intel Compiler Suite
>>>>> (composerxe-2011.4.191). I don't have HDF4 or libcairo and built NCARG
>>>>> and PyNGL without these options.
>>>>> The error is this:
>>>>> /usr/bin/ld: /usr/local/ncarg/lib/libnfpfort.a(dmapgci.o): relocation
>>>>> R_X86_64_32 against `.rodata.str1.4' can not be used when making a
>>>>> shared object; recompile with -fPIC
>>>>> /usr/local/ncarg/lib/libnfpfort.a: could not read symbols: Bad value
>>>>> collect2: ld returned 1 exit status
>>>>> error: Command "gcc -pthread -shared -g -L/usr/local/lib -L/usr/lib32/
>>>>> -O2 - I/usr/local/include -I/usr/include/xorg/
>>>>> build/temp.linux-x86_64-2.7/Helper.o
>>>>> build/temp.linux-x86_64-2.7/hlu_wrap.o
>>>>> build/temp.linux-x86_64-2.7/gsun.o - L/usr/local/ncarg/lib
>>>>> -L/opt/intel/composerxe-2011.4.191/compiler/lib/intel64/
>>>>> -L/opt/EPD/epd-7.1-1-rh5-x86_64/lib -lnfpfort -lhlu -lncarg -lncarg_gks
>>>>> - lncarg_c -lngmath -lX11 -lm -lifcore -lirc -lifport -lpython2.7 -o
>>>>> build/lib.linux-x86_64-2.7/PyNGL/" failed with exit status 1
>>>>> I have no idea why this happens or how to fix it. I included -fPIC in
>>>>> all compiler flags and I'm also wondering why gcc does the linking
>>>>> even though all the compilation is done with icc/ifort.
>>>>> I've attached a script with my environment variables and the build-log.
>>>>> Any help would be greatly appreciated.
>>>>> <><>________________________________________
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Received on Fri Mar 23 09:13:43 2012

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