Re: build problem with intel compiler

Yes, I did verify that they are set, and I certainly set them in the same
shell.
The environment variables are being seen in the compilation step, but linking
is always done with gcc, matter how I set the environment variables.
Btw. according to the build output the -fPIC flag is set during compilation,
and that's why I really don't understand the error. I suspect it is some
compatibility issue between gcc and icc.
I've attached the log file.
  - Andre

On March 23, 2012 11:13:31 AM Mary Haley wrote:
> Andre,
>
> Are you saying that you set all these environment variables, but that they
> have no effect? It's possible that these settings are not being "seen" by
> the PyNGL installation if they are not done in the same shell.
>
> Just before you type "python setup.py install" did you verify that all your
> environment variables were set as expected?
>
> --Mary
>
> On Mar 23, 2012, at 9:03 AM, Andre R. Erler wrote:
> > I've attached a text file with all the environment variables I'm using. I
> > read the page in your link and I have most of them from there, but it
> > seems there are more relevant environment variables but I wasn't able to
> > find a complete list.
> >
> > - Andre
> >
> > On March 23, 2012 09:57:07 AM Mary Haley wrote:
> >> Did you try setting the CC environment variable to the compiler you
> >> want?
> >>
> >> Please see:
> >>
> >> http://www.pyngl.ucar.edu/Download/build_pyngl_from_src.shtml#SetCompile
> >> rEn vVars
> >>
> >> --Mary
> >>
> >> On Mar 22, 2012, at 1:20 PM, Andre R. Erler wrote:
> >>> As far as I am aware, PyNGL doesn't give me any configuration options,
> >>> so I don't know which options are used for PyNGL.
> >>> I used the same environment and compiler flags to build NCL/NCARG and
> >>> PyNGL. I built NCL/NCARG without PNG/libcairo-related stuff and without
> >>> HDF4 and HDF- EOS. There was no mention of requirements in the readme
> >>> so I didn't think this was a problem.
> >>>
> >>> - Andre
> >>>
> >>> On March 21, 2012 11:46:14 PM Mary Haley wrote:
> >>>> It looks like NCL wasn't built with the same options as PyNGL.
> >>>>
> >>>> How did you build NCL? What options did you use?
> >>>>
> >>>> --Mary
> >>>>
> >>>> On Mar 19, 2012, at 5:39 PM, Andre R. Erler wrote:
> >>>>> Hi All,
> >>>>> I've posted to this list earlier. I made some progress building PyNio
> >>>>> and now I need to build PyNGL itself. Unfortunately I'm getting a
> >>>>> rather strange error message.
> >>>>> I'm running a 64bit kubuntu 11.04 system and I built NCARG/NCL and
> >>>>> all the dependencies as well as PyNIO with the Intel Compiler Suite
> >>>>> (composerxe-2011.4.191). I don't have HDF4 or libcairo and built
> >>>>> NCARG and PyNGL without these options.
> >>>>> The error is this:
> >>>>>
> >>>>> /usr/bin/ld: /usr/local/ncarg/lib/libnfpfort.a(dmapgci.o): relocation
> >>>>> R_X86_64_32 against `.rodata.str1.4' can not be used when making a
> >>>>> shared object; recompile with -fPIC
> >>>>> /usr/local/ncarg/lib/libnfpfort.a: could not read symbols: Bad value
> >>>>> collect2: ld returned 1 exit status
> >>>>> error: Command "gcc -pthread -shared -g -L/usr/local/lib
> >>>>> -L/usr/lib32/ -O2 - I/usr/local/include -I/usr/include/xorg/
> >>>>> build/temp.linux-x86_64-2.7/Helper.o
> >>>>> build/temp.linux-x86_64-2.7/hlu_wrap.o
> >>>>> build/temp.linux-x86_64-2.7/gsun.o - L/usr/local/ncarg/lib
> >>>>> -L/opt/intel/composerxe-2011.4.191/compiler/lib/intel64/
> >>>>> -L/opt/EPD/epd-7.1-1-rh5-x86_64/lib -lnfpfort -lhlu -lncarg
> >>>>> -lncarg_gks - lncarg_c -lngmath -lX11 -lm -lifcore -lirc -lifport
> >>>>> -lpython2.7 -o build/lib.linux-x86_64-2.7/PyNGL/_hlu.so" failed with
> >>>>> exit status 1
> >>>>>
> >>>>> I have no idea why this happens or how to fix it. I included -fPIC in
> >>>>> all compiler flags and I'm also wondering why gcc does the linking
> >>>>> even though all the compilation is done with icc/ifort.
> >>>>> I've attached a script with my environment variables and the
> >>>>> build-log. Any help would be greatly appreciated.
> >>>>> <log.setup.py><installPyNGL.sh>______________________________________
> >>>>> __ __ _____ pyngl-talk mailing list
> >>>>> List instructions, subscriber options, unsubscribe:
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> >
> > <installPyNGL.sh>