Hi Mary,
python-numpy is 1.3.0 for ubuntu repositary.
I had a go at compiling PyNGL but failed miserably...
I did install a pre-compiled version of ncl (ncl_ncarg-5.2.1)
but I suspect my system is missing most of the dev packages
needed to compile PyNGL. For instance I see libX11.so but not
the archive lib libX11.a, etc. I'd rather not go this way if I can avoid it!
regards,
jf
On Thu, Feb 10, 2011 at 12:45 PM, Mary Haley <haley@ucar.edu> wrote:
> I have a feeling there's an incompatiblity issue with the version of gcc.
>
> Which version of numpy are you running? I'll see if I can build a PyNGL
> on a system that's closer to yours, but I'm not sure when I can get to
> it.
>
> Of course, you can try building PyNGL yourself from source code, but then you'll
> need to install NCL, and you may have the same incompatibility
> problems.
>
> --Mary
>
>
> On Feb 8, 2011, at 9:06 PM, Jean-Francois Malouin wrote:
>
>> Here it goes:
>>
>> ~$ which python
>>
>> /usr/bin/python
>>
>> ~$ ls -la /usr/lib/python2.6/site-packages/PyNGL
>>
>> drwxr-sr-x 3 root staff 4096 2011-02-05 14:57 ./
>> drwxrwsr-x 3 root staff 4096 2011-02-05 14:57 ../
>> -rwxr-xr-x 1 root staff 289418 2011-02-05 14:57 fplib.so*
>> -rw-r--r-- 1 root staff 8667 2011-02-05 14:57 hlu.py
>> -rw-r--r-- 1 root staff 8074 2011-02-05 14:57 hlu.pyc
>> -rwxr-xr-x 1 root staff 10251474 2011-02-05 14:57 _hlu.so*
>> -rw-r--r-- 1 root staff 14 2011-02-05 14:57 __init__.py
>> -rw-r--r-- 1 root staff 157 2011-02-05 14:57 __init__.pyc
>> drwxr-sr-x 8 root staff 4096 2011-02-05 14:57 ncarg/
>> -rw-r--r-- 1 root staff 249124 2011-02-05 14:57 Ngl.py
>> -rw-r--r-- 1 root staff 187257 2011-02-05 14:57 Ngl.pyc
>> -rw-r--r-- 1 root staff 97 2011-02-05 14:57 pyngl_version.py
>> -rw-r--r-- 1 root staff 305 2011-02-05 14:57 pyngl_version.pyc
>>
>> ~$ cat /usr/lib/python2.6/dist-packages/Ngl.pth
>> PyNGL
>>
>> ~$ python
>> Python 2.6.6 (r266:84292, Sep 15 2010, 15:52:39)
>> [GCC 4.4.5] on linux2
>> Type "help", "copyright", "credits" or "license" for more information.
>>>>> import sys
>>>>> sys.path
>> '', '/home/malin/PlanetaryClimateCourseware/CoursewareModules',
>> '/usr/lib/python2.6', '/usr/lib/python2.6/plat-linux2',
>> '/usr/lib/python2.6/lib-tk', '/usr/lib/python2.6/lib-old',
>> '/usr/lib/python2.6/lib-dynload',
>> '/usr/local/lib/python2.6/dist-packages',
>> '/usr/lib/python2.6/dist-packages',
>> '/usr/lib/python2.6/dist-packages/PyNGL',
>> '/usr/lib/python2.6/dist-packages/PIL',
>> '/usr/lib/python2.6/dist-packages/gst-0.10',
>> '/usr/lib/pymodules/python2.6',
>> '/usr/lib/python2.6/dist-packages/gtk-2.0',
>> '/usr/lib/pymodules/python2.6/gtk-2.0']
>>
>> And this was my very first try at installing PyNgl.
>>
>> Thanks!
>> jf
>>
>>
>> On Tue, Feb 8, 2011 at 12:25 PM, Mary Haley <haley@ucar.edu> wrote:
>>> Hi Jean-Francois,
>>>
>>> I'm hoping that the issue is not related to the fact that you downloaded a
>>> PyNGL
>>> that was compiled with gcc 4.3.2, and you are running gcc 4.4.5. I've never
>>> tried this combo, so I don't know if it will work. I don't have a PyNGL
>>> compiled
>>> with gcc 4.4.5, unfortunately.
>>>
>>> First, though, let's make sure your current environment is set up correctly.
>>>
>>> Please let me know what the following reports on your system:
>>>
>>> which python
>>> ls /usr/local/lib/python2.6/site-packages
>>> ls /usr/local/lib/python2.6/site-packages/PyNGL
>>> cat /usr/local/lib/python2.6/site-packages/Ngl.pth
>>>
>>> and then run python interactively to see what the system path looks like:
>>>
>>> python
>>> import sys
>>> sys.path
>>> <ctrl-d>
>>>
>>> Finally, do you have any old PyNGL installations that might getting loaded
>>> instead of the newer one?
>>>
>>> --Mary
>>>
>>> On Feb 8, 2011, at 8:30 AM, Jean-Francois Malouin wrote:
>>>
>>>> Thanks,
>>>>
>>>> I tried your suggestion: move the PyNgl stuff to
>>>> /usr/lib/python2.6/dist-packages and after editing Ngl.py for the path
>>>> I get:
>>>>
>>>> :~$ python
>>>> Python 2.6.6 (r266:84292, Sep 15 2010, 15:52:39)
>>>> [GCC 4.4.5] on linux2
>>>> Type "help", "copyright", "credits" or "license" for more information.
>>>>>>>
>>>>>>> import Ngl
>>>>
>>>> Segmentation fault
>>>>
>>>> hmmm,
>>>> jf
>>>>
>>>> On Tue, Feb 8, 2011 at 4:27 AM, Nikolay Koldunov <koldunovn@gmail.com>
>>>> wrote:
>>>>>
>>>>> Hi, Jean-Francois
>>>>>
>>>>> Since you using Ubuntu, your problem might be related to renaming of
>>>>> the site-packages to dist-packages in this distribution.
>>>>> Solution to this is described here:
>>>>> http://www.pyngl.ucar.edu/User_forum/Archives/2010/0119.html
>>>>>
>>>>> Hope it will help :)
>>>>>
>>>>> Kolya
>>>>>
>>>>>
>>>>> On Tue, Feb 8, 2011 at 4:45 AM, Jean-Francois Malouin
>>>>> <jfmalouin@gmail.com> wrote:
>>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> First post here.
>>>>>>
>>>>>> I saw the same problem here:
>>>>>> http://www.pyngl.ucar.edu/User_forum/Archives/2009/0044.html
>>>>>>
>>>>>> but there was no solution provided afaik.
>>>>>>
>>>>>>> From Earth System Grid I downloaded the precompiled version of PyNGL
>>>>>>> and ncl:
>>>>>>
>>>>>> PyNGL-1.3.1.linux-debian-i686-gcc432-py265-numpy141.tar.gz
>>>>>> ncl_ncarg-5.2.1.Linux_Debian_i686_nodap_gcc412.tar.gz
>>>>>>
>>>>>> I installed PyNGL in /usr/local/lib/python2.6/site-packages/
>>>>>>
>>>>>> ls -la /usr/local/lib/python2.6/site-packages/
>>>>>>
>>>>>> -rw-r--r-- 1 root staff 6 2011-02-05 14:57 Ngl.pth
>>>>>> drwxr-sr-x 3 root staff 4096 2011-02-05 14:57 PyNGL/
>>>>>> -rw-r--r-- 1 root staff 540 2011-02-05 14:57 PyNGL-1.3.1-py2.6.egg-info
>>>>>>
>>>>>> and ncl_ncarg-5.2.1 in /usr/local/{bin,include,lib}
>>>>>>
>>>>>> I then set PYTHONPATH to
>>>>>>
>>>>>> export
>>>>>> PYTHONPATH="~/PlanetaryClimateCourseware/CoursewareModules:/usr/local/lib/python2.6/site-packages"
>>>>>>
>>>>>> but no go to load the PyNGL module:
>>>>>>
>>>>>> python
>>>>>> Python 2.6.6 (r266:84292, Sep 15 2010, 15:52:39)
>>>>>> [GCC 4.4.5] on linux2
>>>>>> Type "help", "copyright", "credits" or "license" for more information.
>>>>>>>>>
>>>>>>>>> import Ngl
>>>>>>
>>>>>> Traceback (most recent call last):
>>>>>> File "<stdin>", line 1, in <module>
>>>>>> ImportError: No module named Ngl
>>>>>>
>>>>>> I must do something really stupid.
>>>>>> Any help?
>>>>>>
>>>>>> My box:
>>>>>>
>>>>>> Linux bebe 2.6.35-25-generic #44-Ubuntu SMP Fri Jan 21 17:40:48 UTC
>>>>>> 2011 i686 GNU/Linux
>>>>>>
>>>>>> malin@bebe:~$ lsb_release -a
>>>>>> No LSB modules are available.
>>>>>> Distributor ID: Ubuntu
>>>>>> Description: Ubuntu 10.10
>>>>>> Release: 10.10
>>>>>> Codename: maverick
>>>>>>
>>>>>> ii python 2.6.6-2ubuntu2
>>>>>> ii python-dev 2.6.6-2ubuntu2
>>>>>> ii python-cairo 1.8.8-1
>>>>>> ii python-gobject-cairo 2.21.5-0ubuntu3
>>>>>> ii idle-python2.6 2.6.6-5ubuntu1
>>>>>> ii python-numpy 1:1.3.0-3build1
>>>>>> ii gcc 4:4.4.4-1ubuntu2
>>>>>> ii gfortran 4:4.4.4-1ubuntu2
>>>>>> Python 2.6.6 (r266:84292, Sep 15 2010, 15:52:39)
>>>>>>
>>>>>> thanks for the help!
>>>>>> jf
>>>>>> --
>>>>>> "...things standing shall fall,
>>>>>> but the moving shall ever stay."
>>>>>> _______________________________________________
>>>>>> pyngl-talk mailing list
>>>>>> List instructions, subscriber options, unsubscribe:
>>>>>> http://mailman.ucar.edu/mailman/listinfo/pyngl-talk
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Nikolay Koldunov
>>>>> University of Hamburg
>>>>> Institute of Oceanography
>>>>> KlimaCampus
>>>>>
>>>>> koldunovn@gmail.com
>>>>> nikolay.koldunov@zmaw.de
>>>>> ph. +49 40 42838 7580
>>>>> Grindelberg 5, room 210,
>>>>> 20144 Hamburg, Germany
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> "...things standing shall fall,
>>>> but the moving shall ever stay."
>>>> _______________________________________________
>>>> pyngl-talk mailing list
>>>> List instructions, subscriber options, unsubscribe:
>>>> http://mailman.ucar.edu/mailman/listinfo/pyngl-talk
>>>
>>>
>>
>>
>>
>> --
>> "...things standing shall fall,
>> but the moving shall ever stay."
>> _______________________________________________
>> pyngl-talk mailing list
>> List instructions, subscriber options, unsubscribe:
>> http://mailman.ucar.edu/mailman/listinfo/pyngl-talk
>
>
-- "...things standing shall fall, but the moving shall ever stay." _______________________________________________ pyngl-talk mailing list List instructions, subscriber options, unsubscribe: http://mailman.ucar.edu/mailman/listinfo/pyngl-talkReceived on Thu Feb 10 11:09:21 2011
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