Re: build problem with intel compiler

From: Mary Haley <haley_at_nyahnyahspammersnyahnyah>
Date: Fri Mar 23 2012 - 07:57:07 MDT

Did you try setting the CC environment variable to the compiler you want?

Please see:


On Mar 22, 2012, at 1:20 PM, Andre R. Erler wrote:

> As far as I am aware, PyNGL doesn't give me any configuration options, so I
> don't know which options are used for PyNGL.
> I used the same environment and compiler flags to build NCL/NCARG and PyNGL.
> I built NCL/NCARG without PNG/libcairo-related stuff and without HDF4 and HDF-
> EOS. There was no mention of requirements in the readme so I didn't think this
> was a problem.
> - Andre
> On March 21, 2012 11:46:14 PM Mary Haley wrote:
>> It looks like NCL wasn't built with the same options as PyNGL.
>> How did you build NCL? What options did you use?
>> --Mary
>> On Mar 19, 2012, at 5:39 PM, Andre R. Erler wrote:
>>> Hi All,
>>> I've posted to this list earlier. I made some progress building PyNio and
>>> now I need to build PyNGL itself. Unfortunately I'm getting a rather
>>> strange error message.
>>> I'm running a 64bit kubuntu 11.04 system and I built NCARG/NCL and all
>>> the dependencies as well as PyNIO with the Intel Compiler Suite
>>> (composerxe-2011.4.191). I don't have HDF4 or libcairo and built NCARG
>>> and PyNGL without these options.
>>> The error is this:
>>> /usr/bin/ld: /usr/local/ncarg/lib/libnfpfort.a(dmapgci.o): relocation
>>> R_X86_64_32 against `.rodata.str1.4' can not be used when making a shared
>>> object; recompile with -fPIC
>>> /usr/local/ncarg/lib/libnfpfort.a: could not read symbols: Bad value
>>> collect2: ld returned 1 exit status
>>> error: Command "gcc -pthread -shared -g -L/usr/local/lib -L/usr/lib32/
>>> -O2 - I/usr/local/include -I/usr/include/xorg/
>>> build/temp.linux-x86_64-2.7/Helper.o
>>> build/temp.linux-x86_64-2.7/hlu_wrap.o
>>> build/temp.linux-x86_64-2.7/gsun.o - L/usr/local/ncarg/lib
>>> -L/opt/intel/composerxe-2011.4.191/compiler/lib/intel64/
>>> -L/opt/EPD/epd-7.1-1-rh5-x86_64/lib -lnfpfort -lhlu -lncarg -lncarg_gks
>>> - lncarg_c -lngmath -lX11 -lm -lifcore -lirc -lifport -lpython2.7 -o
>>> build/lib.linux-x86_64-2.7/PyNGL/" failed with exit status 1
>>> I have no idea why this happens or how to fix it. I included -fPIC in all
>>> compiler flags and I'm also wondering why gcc does the linking even
>>> though all the compilation is done with icc/ifort.
>>> I've attached a script with my environment variables and the build-log.
>>> Any help would be greatly appreciated.
>>> <><>__________________________________________
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Received on Fri Mar 23 07:57:17 2012

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