trouble installing PyNIO in home directory of hopper

Hi,

now that I've gotten PyNGL to install successfully in my home directory on hopper, I thought I should try to get PyNIO working.

i set the module environment to use gcc by:

module unload pgi
module load gcc

and the env variables I am using are:

export F2CLIBS=gfortran
export F2CLIBS_PREFIX=/opt/gcc/4.6.1/snos/lib/
export HAS_OPENDAP=0
export NETCDF_PREFIX=/opt/cray/netcdf/4.1.1.0/netcdf-gnu

the library seems to build ok but when I try to load a CLM history file, I get the following error:

IPython 0.12 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object', use 'object??' for extra details.

In [1]: import Nio

In [2]: file_in = Nio.open_file('cktest_clm45sci_v2_debug1.clm2.h0.0001-02.nc')
Error: in routine alloca() there is a
stack overflow: thread 0, max 8180KB, used 0KB, request 8B

It does seem to be able to load smaller files, however. Any idea what is causing this?

Thanks,
Charlie

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Received on Tue Mar 6 17:07:09 2012